7YNE
Crystal structure of fragmin domain-1 (1-160) in complex with G-form actin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AichiSR BEAMLINE BL2S1 |
Synchrotron site | AichiSR |
Beamline | BL2S1 |
Temperature [K] | 95 |
Detector technology | CCD |
Collection date | 2017-03-21 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.12 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 56.898, 97.999, 420.812 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.210 - 2.700 |
R-factor | 0.2751 |
Rwork | 0.273 |
R-free | 0.30780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7w52 |
Data reduction software | XDS (Mar 15, 2019) |
Data scaling software | XSCALE (Mar 15, 2019) |
Phasing software | MOLREP (11.5.02) |
Refinement software | PHENIX (1.18) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.210 | 49.210 | 2.870 |
High resolution limit [Å] | 2.700 | 8.010 | 2.700 |
Rmerge | 0.173 | 0.050 | 1.385 |
Rmeas | 0.186 | 0.055 | 1.489 |
Total number of observations | 479002 | ||
Number of reflections | 65917 | 2777 | 10436 |
<I/σ(I)> | 9.89 | 32.85 | 1.32 |
Completeness [%] | 99.9 | 99.1 | 99.9 |
Redundancy | 7.267 | 6.619 | 7.329 |
CC(1/2) | 0.996 | 0.996 | 0.518 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.1 M sodium acetate, pH 5.0, 0.1 M calcium acetate, and 12% PEG4000 |