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7YKI

Crystal structure of MAGI2 PDZ0-GK domain in complex with phospho-SAPAP1 GBR3 peptide

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL17U1
Synchrotron siteSSRF
BeamlineBL17U1
Temperature [K]100
Detector technologyCCD
Collection date2013-06-15
DetectorADSC QUANTUM 315r
Wavelength(s)0.97930
Spacegroup nameP 21 2 21
Unit cell lengths65.975, 78.909, 92.997
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution44.496 - 2.000
Rwork0.207
R-free0.24860
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2eeh 5ypo
RMSD bond length0.008
RMSD bond angle1.489
Data reduction softwareDENZO
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0352)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.030
High resolution limit [Å]2.0005.4302.000
Rmerge0.0910.0360.506
Total number of observations138910
Number of reflections3252916521623
<I/σ(I)>12.9
Completeness [%]97.389.998.9
Redundancy4.344.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2892.1 M ammonium phosphate dibasic, 0.2 M ammonium sulfate, 0.1M Tris (pH 8.5)

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PDB entries from 2024-05-15

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