Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7YEJ

TR-SFX MmCPDII-DNA complex: 100 ns time-point collected in SACLA. Includes 100 ns, dark, and extrapolated structure factors

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeFREE ELECTRON LASER
Source detailsSACLA BEAMLINE BL2
Synchrotron siteSACLA
BeamlineBL2
Temperature [K]298
Detector technologyCCD
Collection date2019-05-28
DetectorMPCCD
Wavelength(s)1.0875
Spacegroup nameP 21 21 21
Unit cell lengths72.530, 115.710, 169.280
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution34.050 - 2.550
R-factor0.2039
Rwork0.203
R-free0.22350
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7ydz
RMSD bond length0.004
RMSD bond angle0.529
Data reduction softwareCrystFEL
Data scaling softwarepointless
Phasing softwareREFMAC
Refinement softwarePHENIX ((1.20.1_4487: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]34.0502.570
High resolution limit [Å]2.5502.550
Number of reflections473182372
<I/σ(I)>8.742.84
Completeness [%]100.0100
Redundancy361.07207.3
CC(1/2)0.9870.836
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1BATCH MODE4.6296100 mM Sodium Acetate pH 4.6 250 mM ammonium sulfate 4% PEG4000 (w/v) 50 mM DTT

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon