7YDZ
TR-SFX MmCPDII-DNA complex: dark state as collected in SACLA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | FREE ELECTRON LASER |
Source details | SACLA BEAMLINE BL2 |
Synchrotron site | SACLA |
Beamline | BL2 |
Temperature [K] | 298 |
Detector technology | CCD |
Collection date | 2017-12-01 |
Detector | MPCCD |
Wavelength(s) | 1.0875 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 72.530, 115.710, 169.280 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.760 - 2.230 |
R-factor | 0.1646 |
Rwork | 0.163 |
R-free | 0.19200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7yc7 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.055 |
Data reduction software | CrystFEL |
Data scaling software | pointless |
Phasing software | REFMAC |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.760 | 2.250 |
High resolution limit [Å] | 2.230 | 2.230 |
Number of reflections | 70293 | 3474 |
<I/σ(I)> | 6.02 | 1.11 |
Completeness [%] | 100.0 | |
Redundancy | 608.43 | |
CC(1/2) | 0.989 | 0.516 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | BATCH MODE | 4.6 | 296 | 100 mM Sodium Acetate pH 4.6 250 mM ammonium sulfate 4% PEG4000 (w/v) 50 mM DTT |