7YCW
Crystal Form 1 of Truncated Antitoxin ParD (2-54,containg RHH domain) from Pseudoalteromonas rubra
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-12-08 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.979150 |
Spacegroup name | P 42 21 2 |
Unit cell lengths | 61.836, 61.836, 129.971 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.780 - 2.200 |
R-factor | 0.2204 |
Rwork | 0.219 |
R-free | 0.24860 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7b22 |
RMSD bond length | 0.008 |
RMSD bond angle | 0.961 |
Data reduction software | XDS (Feb 5, 2021 BUILT=20210323) |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.780 | 2.279 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.069 | 0.601 |
Rmeas | 0.071 | 0.613 |
Rpim | 0.015 | 0.119 |
Number of reflections | 13454 | 1294 |
<I/σ(I)> | 30.41 | 5.95 |
Completeness [%] | 99.7 | 98.92 |
Redundancy | 24.1 | 25.8 |
CC(1/2) | 0.999 | 0.989 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 289 | 0.2 M Sodium acetate trihydrate,0.1 M Sodium citrate pH 5.5, 5 % w/v PEG 4000 |