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7YBG

Crystal structure of the SARS-CoV-2 papain-like protease (C111S mutant)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL18U1
Synchrotron siteSSRF
BeamlineBL18U1
Temperature [K]100
Detector technologyPIXEL
Collection date2020-10-24
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.97915
Spacegroup nameP 32 2 1
Unit cell lengths80.856, 80.856, 135.938
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution19.420 - 1.900
R-factor0.1744
Rwork0.173
R-free0.20650
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4p16
RMSD bond length0.008
RMSD bond angle0.910
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwareMOLREP
Refinement softwareBUSTER (2.10.4 (16-JUL-2021))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]19.4201.940
High resolution limit [Å]1.9001.900
Rmerge0.1321.268
Rpim0.0320.290
Number of reflections412422750
<I/σ(I)>14.82.6
Completeness [%]99.9
Redundancy18.5
CC(1/2)0.9990.834
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2771.4 M sodium malonate dibasic monohydrate

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PDB entries from 2024-05-15

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