7YBG
Crystal structure of the SARS-CoV-2 papain-like protease (C111S mutant)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-10-24 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97915 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 80.856, 80.856, 135.938 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 19.420 - 1.900 |
R-factor | 0.1744 |
Rwork | 0.173 |
R-free | 0.20650 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4p16 |
RMSD bond length | 0.008 |
RMSD bond angle | 0.910 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | BUSTER (2.10.4 (16-JUL-2021)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 19.420 | 1.940 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.132 | 1.268 |
Rpim | 0.032 | 0.290 |
Number of reflections | 41242 | 2750 |
<I/σ(I)> | 14.8 | 2.6 |
Completeness [%] | 99.9 | |
Redundancy | 18.5 | |
CC(1/2) | 0.999 | 0.834 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 1.4 M sodium malonate dibasic monohydrate |