7Y8X
Crystal structure of AlbEF homolog from Quasibacillus thermotolerans in complex with Ni(II)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NW12A |
Synchrotron site | Photon Factory |
Beamline | AR-NW12A |
Temperature [K] | 95 |
Detector technology | PIXEL |
Collection date | 2018-06-23 |
Detector | DECTRIS PILATUS3 S 2M |
Wavelength(s) | 1.00000 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 136.382, 136.382, 118.440 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 44.710 - 2.250 |
R-factor | 0.2015 |
Rwork | 0.200 |
R-free | 0.23320 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7y8u |
RMSD bond length | 0.002 |
RMSD bond angle | 0.412 |
Data reduction software | XDS (20171218) |
Data scaling software | Aimless (0.7.1) |
Phasing software | MOLREP (11.6.03) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.710 | 2.310 |
High resolution limit [Å] | 2.250 | 2.250 |
Rmerge | 0.049 | 0.638 |
Rmeas | 0.050 | 0.653 |
Rpim | 0.011 | 0.140 |
Number of reflections | 60598 | 4435 |
<I/σ(I)> | 40.5 | 6.3 |
Completeness [%] | 99.9 | 99.6 |
Redundancy | 20.4 | 21.3 |
CC(1/2) | 1.000 | 0.976 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 293 | sodium/potassium phosphate |