7XPV
crysteal structure of MtdL-S228A-His soaked with GDP-Fucf and Mn
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-05-12 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.979 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 98.135, 162.670, 114.927 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.930 - 2.400 |
R-factor | 0.2594 |
Rwork | 0.258 |
R-free | 0.29280 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7xpr |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.7) |
Phasing software | PHASER |
Refinement software | PHENIX (1.19) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.930 | 46.930 | 2.490 |
High resolution limit [Å] | 2.400 | 8.980 | 2.400 |
Rmerge | 0.157 | 0.034 | 1.387 |
Rmeas | 0.163 | 0.036 | 1.440 |
Rpim | 0.045 | 0.010 | 0.386 |
Total number of observations | 478202 | 8691 | 51648 |
Number of reflections | 36272 | 772 | 3759 |
<I/σ(I)> | 12.1 | 38.3 | 2.2 |
Completeness [%] | 99.9 | 98.9 | 99.9 |
Redundancy | 13.2 | 11.3 | 13.7 |
CC(1/2) | 0.999 | 1.000 | 0.900 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 283 | 0.2 M ammonium sulfate, 0.1 M Tris, pH 7.5, 20% (w/v) PEG 5000 MME |