7XLW
Crystal structure of a NIR-emitting DNA-stabilized Ag16 nanocluster (G7I/G9I mutant)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-17A |
Synchrotron site | Photon Factory |
Beamline | BL-17A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-03-22 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9 |
Spacegroup name | P 1 |
Unit cell lengths | 28.232, 49.663, 55.885 |
Unit cell angles | 74.03, 90.37, 83.73 |
Refinement procedure
Resolution | 41.760 - 1.890 |
R-factor | 0.1529 |
Rwork | 0.150 |
R-free | 0.18260 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6jr4 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 41.760 | 41.760 | 1.940 |
High resolution limit [Å] | 1.890 | 8.470 | 1.890 |
Rmerge | 0.083 | 0.026 | 0.377 |
Rmeas | 0.098 | 0.030 | 0.443 |
Total number of observations | 80305 | ||
Number of reflections | 22032 | 254 | 1571 |
<I/σ(I)> | 10.78 | 32.58 | 3.18 |
Completeness [%] | 95.3 | 97.7 | 92.9 |
Redundancy | 3.645 | 3.256 | 3.631 |
CC(1/2) | 0.998 | 0.998 | 0.928 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 293 | MPD, spermine, ammonium nitrate, MOPS |