7XEB
Collagenase from Grimontia (Vibrio) hollisae 1706B complexed with Gly-Pro-Hyp
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL26B1 |
Synchrotron site | SPring-8 |
Beamline | BL26B1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-12-12 |
Detector | DECTRIS EIGER R 4M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 72.972, 75.549, 130.551 |
Unit cell angles | 90.00, 103.06, 90.00 |
Refinement procedure
Resolution | 45.410 - 2.390 |
R-factor | 0.2086 |
Rwork | 0.206 |
R-free | 0.25480 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7wss |
RMSD bond length | 0.008 |
RMSD bond angle | 0.946 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX (1.20.1_4487) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.540 |
High resolution limit [Å] | 2.390 | 2.390 |
Rmerge | 0.093 | 0.727 |
Rmeas | 0.109 | 0.844 |
Number of reflections | 54059 | 8681 |
<I/σ(I)> | 12.38 | 2.34 |
Completeness [%] | 98.5 | 98.3 |
Redundancy | 3.71 | 3.84 |
CC(1/2) | 0.997 | 0.787 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 277 | 0.1M Cacodylic acid sodium salt, 0.2M Calcium acetate, 18%(w/v) PEG 8000 |