7X9E
Crystal structure of the 76E1 Fab in complex with a SARS-CoV-2 spike peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-12-01 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.979 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 130.356, 84.515, 87.114 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.880 - 2.600 |
R-factor | 0.1974 |
Rwork | 0.195 |
R-free | 0.24320 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6bqb |
RMSD bond length | 0.008 |
RMSD bond angle | 1.039 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX (1.11.1_2575) |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.690 |
High resolution limit [Å] | 2.600 | 2.600 |
Rmerge | 0.134 | 1.044 |
Number of reflections | 30037 | 2953 |
<I/σ(I)> | 18.8 | 2.2 |
Completeness [%] | 99.6 | |
Redundancy | 5.5 | |
CC(1/2) | 0.997 | 0.534 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.5 | 289 | 0.1M sodium citrate pH 4.5, 20% PEG 4000 |