7X7D
SARS-CoV-2 Delta RBD and Nb22
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL02U1 |
Synchrotron site | SSRF |
Beamline | BL02U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-11-09 |
Detector | DECTRIS EIGER2 X 9M |
Wavelength(s) | 0.97918 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 151.824, 108.557, 115.310 |
Unit cell angles | 90.00, 126.23, 90.00 |
Refinement procedure
Resolution | 61.230 - 2.920 |
R-factor | 0.2079 |
Rwork | 0.205 |
R-free | 0.25570 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7cjf |
RMSD bond length | 0.009 |
RMSD bond angle | 1.100 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.20-4459) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 93.000 | 3.000 |
High resolution limit [Å] | 2.900 | 2.900 |
Number of reflections | 30832 | 3106 |
<I/σ(I)> | 6.9 | |
Completeness [%] | 93.8 | |
Redundancy | 3.2 | |
CC(1/2) | 0.985 | 0.836 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 290 | 0.1 M Tris (pH 7.0), 37.5% Jeffamine |