7X52
Crystal structure of Bacteroides thetaiotaomicron glutamate decarboxylase BTGAD-PLP complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NFPSS BEAMLINE BL19U1 |
Synchrotron site | NFPSS |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-05-02 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.979 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 109.765, 131.267, 109.853 |
Unit cell angles | 90.00, 100.28, 90.00 |
Refinement procedure
Resolution | 36.000 - 1.900 |
R-factor | 0.1664 |
Rwork | 0.165 |
R-free | 0.19430 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1pmm |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.1_4122) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.970 |
High resolution limit [Å] | 1.900 | 4.090 | 1.900 |
Rmerge | 0.071 | 0.044 | 0.526 |
Rmeas | 0.082 | 0.051 | 0.611 |
Rpim | 0.041 | 0.026 | 0.306 |
Total number of observations | 906940 | ||
Number of reflections | 238249 | 23928 | 23755 |
<I/σ(I)> | 7 | ||
Completeness [%] | 98.9 | 98.1 | 98.9 |
Redundancy | 3.8 | 3.8 | 3.7 |
CC(1/2) | 0.996 | 0.800 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4 | 293 | 19% PEG 3350, 1% pH4.0 TacsimateTM, 0.1M pH4.35 Sodium acetate |