7WXO
Crystal Structure of PL-5 family polysaccharide lyase PanPL from Pandoraea apista at pH8.5 in apo form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-03-12 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 1.07234 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 35.922, 85.481, 90.820 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 62.250 - 1.960 |
R-factor | 0.1978 |
Rwork | 0.196 |
R-free | 0.23250 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7wxj |
RMSD bond length | 0.003 |
RMSD bond angle | 0.656 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 62.250 | 1.993 |
High resolution limit [Å] | 1.959 | 1.959 |
Rmerge | 0.102 | 0.810 |
Rpim | 0.030 | 0.235 |
Number of reflections | 20836 | 1047 |
<I/σ(I)> | 19.2 | 3.3 |
Completeness [%] | 100.0 | 100 |
Redundancy | 12.8 | 12.6 |
CC(1/2) | 0.998 | 0.878 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 295.15 | 0.1 M Tris pH 8.5, 25% w/v Polyethylene glycol 3,350 |