7WRU
Crystal structure of the apo chicken glutamyl-tRNA synthetase 1 (EARS1)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 11C |
Synchrotron site | PAL/PLS |
Beamline | 11C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-04-10 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.0094 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 89.044, 41.762, 92.186 |
Unit cell angles | 90.00, 100.20, 90.00 |
Refinement procedure
Resolution | 45.360 - 2.500 |
R-factor | 0.2262 |
Rwork | 0.224 |
R-free | 0.27030 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4r3z |
RMSD bond length | 0.012 |
RMSD bond angle | 1.133 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.14-3260_1069) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.360 | 2.540 |
High resolution limit [Å] | 2.500 | 2.500 |
Rmeas | 0.386 | 2.885 |
Number of reflections | 23252 | 2352 |
<I/σ(I)> | 8.11 | |
Completeness [%] | 98.3 | |
Redundancy | 6.5 | |
CC(1/2) | 0.976 | 0.612 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 85 mM HEPES (pH 7.5), 8.5% isopropanol, 15% glycerol, 40 mM NaF and 15% PEG 8000 |