7WGD
X-ray structure of thermostabilized Drosophila dopamine transporter with GABA transporter1-like substitutions in the binding site, in substrate-free form.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-02-26 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 96.388, 140.709, 168.021 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.430 - 3.200 |
R-factor | 0.2456 |
Rwork | 0.244 |
R-free | 0.28640 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4xnu |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.3) |
Phasing software | PHASER |
Refinement software | PHENIX (v1.20rc4-4425) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.430 | 48.430 | 3.340 |
High resolution limit [Å] | 3.200 | 11.070 | 3.200 |
Rmerge | 0.717 | 0.053 | 5.547 |
Rmeas | 0.753 | 0.056 | 5.763 |
Rpim | 0.219 | 0.016 | 1.547 |
Total number of observations | 497543 | 12486 | 62714 |
Number of reflections | 38565 | 1035 | 4599 |
<I/σ(I)> | 9.1 | 33.1 | 1.2 |
Completeness [%] | 99.8 | 98.3 | 98.8 |
Redundancy | 12.9 | 12.1 | 13.6 |
CC(1/2) | 0.914 | 0.999 | 0.428 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.2 | 277 | 0.1M MOPS pH 7.2, 36% PEG 600 |