7WDT
6-sulfo-beta-D-N-acetylglucosaminidase from Bifidobacterium bifidum in complex with GlcNAc-6S
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SPRING-8 BEAMLINE BL26B2 |
| Synchrotron site | SPring-8 |
| Beamline | BL26B2 |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2018-11-08 |
| Detector | RAYONIX MX225-HS |
| Wavelength(s) | 1.0 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 78.131, 57.879, 98.530 |
| Unit cell angles | 90.00, 98.59, 90.00 |
Refinement procedure
| Resolution | 48.760 - 1.650 |
| R-factor | 0.1712 |
| Rwork | 0.170 |
| R-free | 0.19980 |
| Structure solution method | SAD |
| RMSD bond length | 0.011 |
| RMSD bond angle | 1.617 |
| Data reduction software | XDS |
| Data scaling software | Aimless |
| Phasing software | PHENIX |
| Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 48.760 | 1.680 |
| High resolution limit [Å] | 1.650 | 1.650 |
| Rmerge | 0.069 | 0.975 |
| Rpim | 0.063 | 0.779 |
| Number of reflections | 104324 | 5063 |
| <I/σ(I)> | 10.2 | |
| Completeness [%] | 99.6 | 98.9 |
| Redundancy | 3.8 | 3.8 |
| CC(1/2) | 0.993 | 0.720 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 10% (w/v) PEG 8000, 0.1 M HEPES-NaOH (pH 7.5) and 5 mM GlcNAc-6S |
