7W9J
Crystal Structure of the Oxomolybdenum Mesoporphyrin IX-Reconstituted CYP102A1 (P450BM3) Heme Domain with N-Dodecanoyl-L-Homoserine Lactone
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL45XU |
Synchrotron site | SPring-8 |
Beamline | BL45XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-04-23 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.000000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 58.295, 121.827, 148.689 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.630 - 1.750 |
R-factor | 0.1797 |
Rwork | 0.178 |
R-free | 0.20990 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6k58 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.403 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.630 | 49.630 | 1.850 |
High resolution limit [Å] | 1.750 | 5.210 | 1.750 |
Rmerge | 0.143 | 0.056 | 1.410 |
Rmeas | 0.154 | 0.060 | 1.527 |
Total number of observations | 762372 | ||
Number of reflections | 107242 | 4359 | 16774 |
<I/σ(I)> | 9.29 | 29.21 | 1.47 |
Completeness [%] | 99.1 | 99.6 | 97 |
Redundancy | 7.109 | 7.97 | 6.727 |
CC(1/2) | 0.998 | 0.998 | 0.581 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | BATCH MODE | 277 | 8.5%(w/v)PEG8000, 60 mM Magnesium Chloride, 75 mM Tris-HCl, 250 uM N-Dodecanoyl-L-Homoserine Lactone, 1%(v/v) Methanol |