7W5L
The crystal structure of the oxidized form of Gluconobacter oxydans WSH-004 SNDH
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-06-18 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.979 |
Spacegroup name | P 62 2 2 |
Unit cell lengths | 181.018, 181.018, 77.593 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 29.070 - 2.500 |
R-factor | 0.1957 |
Rwork | 0.194 |
R-free | 0.23520 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3u4j |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | MOLREP |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.590 |
High resolution limit [Å] | 2.500 | 5.380 | 2.500 |
Rmerge | 0.107 | 0.034 | 1.215 |
Rmeas | 0.109 | 0.034 | 1.232 |
Rpim | 0.017 | 0.006 | 0.198 |
Total number of observations | 993880 | ||
Number of reflections | 26284 | 2841 | 2564 |
<I/σ(I)> | 6 | ||
Completeness [%] | 100.0 | 99.7 | 100 |
Redundancy | 37.8 | 35 | 37.6 |
CC(1/2) | 1.000 | 0.913 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 290.15 | 0.1 M BIS-TRIS pH 5.5, 2.0 M Ammonium sulfate |