7W36
Crystal structure of human Atg5 complexed with a stapled peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL32XU |
Synchrotron site | SPring-8 |
Beamline | BL32XU |
Temperature [K] | 95 |
Detector technology | PIXEL |
Collection date | 2020-02-05 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 43.794, 73.083, 102.127 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.249 - 3.000 |
R-factor | 0.2494 |
Rwork | 0.245 |
R-free | 0.28660 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4tq1 |
RMSD bond length | 0.004 |
RMSD bond angle | 0.792 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.249 | 3.030 |
High resolution limit [Å] | 2.870 | 2.870 |
Rmeas | 0.140 | |
Number of reflections | 14426 | 2288 |
<I/σ(I)> | 7.33 | |
Completeness [%] | 99.5 | |
Redundancy | 3.6 | |
CC(1/2) | 0.638 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 20% PEG 3350, 0.2M MgCl2, 0.1M Tris-HCl pH8.5 |