7VUQ
Structure of NF-kB p52 homodimer bound to A/T-centric P-Selectin kB DNA fragment
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 93 |
Detector technology | PIXEL |
Collection date | 2019-11-11 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.979183 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 84.453, 84.627, 139.427 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.003 - 3.100 |
Rwork | 0.224 |
R-free | 0.24870 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1a3q |
RMSD bond length | 0.011 |
RMSD bond angle | 1.866 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.480 | 3.270 |
High resolution limit [Å] | 3.100 | 3.100 |
Number of reflections | 18756 | 2690 |
<I/σ(I)> | 16.1 | |
Completeness [%] | 99.8 | |
Redundancy | 13.1 | |
CC(1/2) | 0.999 | 0.934 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.1M Sodium malonate, pH 4.0, 50mM CsCl, 2.5% PEG 3350 |