Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7VSA

E. coli Ribonuclease HI in complex with two Mg2+

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSPRING-8 BEAMLINE BL45XU
Synchrotron siteSPring-8
BeamlineBL45XU
Temperature [K]95
Detector technologyPIXEL
Collection date2020-10-17
DetectorDECTRIS PILATUS3 6M
Wavelength(s)1
Spacegroup nameP 2 2 21
Unit cell lengths61.639, 64.288, 80.288
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution48.890 - 1.760
R-factor0.202
Rwork0.201
R-free0.23280
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4z0u
RMSD bond length0.006
RMSD bond angle0.804
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.8901.790
High resolution limit [Å]1.7601.760
Rmerge0.0580.596
Rmeas0.0700.706
Rpim0.0380.381
Number of reflections322561799
<I/σ(I)>14.9
Completeness [%]99.8
Redundancy6.3
CC(1/2)0.9970.913
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.52930.2 M ammonium sulfate, 0.1 M MES monohydrate pH 6.5, 30% w/v polyethylene glycol monomethyl ether 5,000

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon