7VSA
E. coli Ribonuclease HI in complex with two Mg2+
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL45XU |
Synchrotron site | SPring-8 |
Beamline | BL45XU |
Temperature [K] | 95 |
Detector technology | PIXEL |
Collection date | 2020-10-17 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1 |
Spacegroup name | P 2 2 21 |
Unit cell lengths | 61.639, 64.288, 80.288 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.890 - 1.760 |
R-factor | 0.202 |
Rwork | 0.201 |
R-free | 0.23280 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4z0u |
RMSD bond length | 0.006 |
RMSD bond angle | 0.804 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.890 | 1.790 |
High resolution limit [Å] | 1.760 | 1.760 |
Rmerge | 0.058 | 0.596 |
Rmeas | 0.070 | 0.706 |
Rpim | 0.038 | 0.381 |
Number of reflections | 32256 | 1799 |
<I/σ(I)> | 14.9 | |
Completeness [%] | 99.8 | |
Redundancy | 6.3 | |
CC(1/2) | 0.997 | 0.913 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 0.2 M ammonium sulfate, 0.1 M MES monohydrate pH 6.5, 30% w/v polyethylene glycol monomethyl ether 5,000 |