7VQ9
Structure of MA1831 from Methanosarcina acetivorans in complex with farnesyl thiopyrophosphate and isopentyl S-thiolodiphosphate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | LIQUID ANODE |
Source details | BRUKER METALJET |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-06-18 |
Detector | Bruker PHOTON III |
Wavelength(s) | 1.34138 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 111.899, 81.308, 60.023 |
Unit cell angles | 90.00, 103.46, 90.00 |
Refinement procedure
Resolution | 35.880 - 1.890 |
R-factor | 0.1444 |
Rwork | 0.142 |
R-free | 0.18500 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7caq |
RMSD bond length | 0.012 |
RMSD bond angle | 1.700 |
Data reduction software | SAINT |
Data scaling software | Aimless (0.6.3) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 35.880 | 24.510 | 1.920 |
High resolution limit [Å] | 1.870 | 8.990 | 1.870 |
Rmerge | 0.055 | 0.036 | 0.260 |
Rmeas | 0.059 | 0.039 | 0.305 |
Rpim | 0.020 | 0.013 | 0.156 |
Total number of observations | 3345 | 7708 | |
Number of reflections | 41757 | 384 | 2253 |
<I/σ(I)> | 20.8 | 51.2 | 4.3 |
Completeness [%] | 98.7 | 95.1 | 83 |
Redundancy | 7.4 | 8.7 | 3.4 |
CC(1/2) | 0.999 | 0.999 | 0.935 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 298 | 1.5M ammonium sulfate, 0.1M Tris (pH 8.0), 12% glycerol |