7VOK
The Crystal structure of EF-Tu and GDP from Mycobacterium tuberculosis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 80 |
Detector technology | PIXEL |
Collection date | 2020-07-13 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9793 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 95.059, 75.180, 127.176 |
Unit cell angles | 90.00, 93.77, 90.00 |
Refinement procedure
Resolution | 29.950 - 3.400 |
R-factor | 0.2473 |
Rwork | 0.244 |
R-free | 0.30160 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1efc |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.1_4122) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.000 | 30.000 | 3.520 |
High resolution limit [Å] | 3.400 | 7.290 | 3.400 |
Rmerge | 0.094 | 0.067 | 0.317 |
Rmeas | 0.104 | 0.073 | 0.378 |
Rpim | 0.043 | 0.028 | 0.201 |
Total number of observations | 109018 | ||
Number of reflections | 23713 | 2509 | 2241 |
<I/σ(I)> | 7.9 | ||
Completeness [%] | 94.9 | 96.6 | 90.7 |
Redundancy | 4.6 | 6.4 | 2.9 |
CC(1/2) | 0.994 | 0.633 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 291 | 26% PEG 6000, 100mM N-2-hydroxyethylpiperazine-N-ethane-sulphonicacid pH 7.0 |