7VMI
Crystal structure of Arabidopsis thaliana HDT3
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | RRCAT INDUS-2 BEAMLINE PX-BL21 |
Synchrotron site | RRCAT INDUS-2 |
Beamline | PX-BL21 |
Temperature [K] | 103 |
Detector technology | CCD |
Collection date | 2019-09-16 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.979470 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 54.623, 77.600, 55.511 |
Unit cell angles | 90.00, 91.82, 90.00 |
Refinement procedure
Resolution | 35.260 - 1.800 |
R-factor | 0.191 |
Rwork | 0.190 |
R-free | 0.21100 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7vmf |
RMSD bond length | 0.015 |
RMSD bond angle | 1.759 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.130 | 1.780 |
High resolution limit [Å] | 1.750 | 1.750 |
Rmerge | 0.037 | 0.495 |
Rmeas | 0.051 | 0.678 |
Number of reflections | 46503 | 2562 |
<I/σ(I)> | 16.9 | 2.3 |
Completeness [%] | 99.5 | 99.8 |
Redundancy | 3.9 | 4 |
CC(1/2) | 0.999 | 0.869 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 291 | 0.1 M succinic acid pH 7.0, 0.1 M bicine, 30% V/V PEG MME 550 |