7VMG
Crystal structure of tubulin with 17j
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-10-23 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 0.97853 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 105.330, 158.210, 182.480 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 91.240 - 2.390 |
R-factor | 0.2111 |
Rwork | 0.210 |
R-free | 0.25030 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4i55 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19_4092) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 119.540 | 119.540 | 2.430 |
High resolution limit [Å] | 2.390 | 13.090 | 2.390 |
Rmerge | 0.055 | 0.031 | 0.836 |
Rmeas | 0.060 | 0.036 | 0.903 |
Rpim | 0.023 | 0.018 | 0.338 |
Total number of observations | 809860 | 3885 | 41077 |
Number of reflections | 120979 | 830 | 5905 |
<I/σ(I)> | 21 | 44.7 | 2.3 |
Completeness [%] | 99.9 | 97.6 | 100 |
Redundancy | 6.7 | 4.7 | 7 |
CC(1/2) | 0.999 | 0.991 | 0.780 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 293 | 3% PEG 4000, 4-6% glycerol, 30 mM magnesium chloride, 30 mM calcium chloride, 100 mM MES/Imidazole , pH 6.7, VAPOR DIFFUSION, SITTING DROP, temperature 293K |