Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7VMD

Crystal structure of a hydrolases Ple628 from marine microbial consortium

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL17B1
Synchrotron siteSSRF
BeamlineBL17B1
Temperature [K]100
Detector technologyCCD
Collection date2021-07-04
DetectorRAYONIX MX300HE
Wavelength(s)1.0
Spacegroup nameP 21 21 21
Unit cell lengths43.733, 64.540, 81.409
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution25.970 - 1.690
R-factor0.1556
Rwork0.154
R-free0.18590
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6sbn
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]30.00030.0001.750
High resolution limit [Å]1.6903.6401.690
Rmerge0.1240.0550.620
Rmeas0.1320.0580.665
Rpim0.0440.0190.234
Total number of observations230187
Number of reflections2662528492576
<I/σ(I)>3.6
Completeness [%]99.899.799
Redundancy8.68.67.4
CC(1/2)0.9980.810
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.529520% PEG 8000, 0.2M calcium acelate, 0.1M sodium cacodylate

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon