7VJ6
SFX structure of archaeal class II CPD photolyase from Methanosarcina mazei in the semiquinone state
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | FREE ELECTRON LASER |
Source details | SACLA BEAMLINE BL2 |
Synchrotron site | SACLA |
Beamline | BL2 |
Temperature [K] | 293 |
Detector technology | CCD |
Collection date | 2017-11-09 |
Detector | MPCCD |
Wavelength(s) | 1.7712035 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 70.550, 70.550, 245.700 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 31.650 - 2.100 |
R-factor | 0.1462 |
Rwork | 0.145 |
R-free | 0.17680 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6IWX |
RMSD bond length | 0.002 |
RMSD bond angle | 0.396 |
Data reduction software | CrystFEL (0.6.3) |
Data scaling software | CrystFEL (0.6.3) |
Phasing software | PHASER (2.8.2) |
Refinement software | PHENIX ((1.19_4092: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.320 | 2.130 |
High resolution limit [Å] | 2.090 | 2.090 |
Number of reflections | 38983 | 2081 |
<I/σ(I)> | 5.54 | 0.49 |
Completeness [%] | 100.0 | 100 |
Redundancy | 438.4 | 57.4 |
CC(1/2) | 0.990 | 0.510 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | BATCH MODE | 8 | 277 | 0.5-0.65 M Li2SO4, 10-15% (W/V) PEG 8000 |