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7VHD

Crystal structure of the STX2a complexed with R4A peptide

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPHOTON FACTORY BEAMLINE BL-1A
Synchrotron sitePhoton Factory
BeamlineBL-1A
Temperature [K]95
Detector technologyPIXEL
Collection date2018-02-04
DetectorDECTRIS EIGER X 4M
Wavelength(s)1.1000
Spacegroup nameP 61
Unit cell lengths146.410, 146.410, 60.669
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution47.920 - 1.800
R-factor0.1677
Rwork0.167
R-free0.19080
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7d6r
RMSD bond length0.006
RMSD bond angle0.863
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwareMOLREP
Refinement softwarePHENIX (1.19_4092)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]47.9201.840
High resolution limit [Å]1.8001.800
Rpim0.0350.268
Number of reflections689354085
<I/σ(I)>18.23
Completeness [%]100.0
Redundancy21.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION2934 M Sodium Formate, 100mM MES pH 6.5, 50 mM PPS

246031

PDB entries from 2025-12-10

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