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7VFK

Crystal structure of SdgB (ligand-free form)

Replaces:  7EC2
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPAL/PLS BEAMLINE 7A (6B, 6C1)
Synchrotron sitePAL/PLS
Beamline7A (6B, 6C1)
Temperature [K]100
Detector technologyCCD
Collection date2014-10-10
DetectorADSC QUANTUM 270
Wavelength(s)0.9793
Spacegroup nameP 1 21 1
Unit cell lengths42.968, 206.342, 66.329
Unit cell angles90.00, 105.06, 90.00
Refinement procedure
Resolution29.260 - 1.840
R-factor0.2189
Rwork0.217
R-free0.25850
Structure solution methodSAD
RMSD bond length0.008
RMSD bond angle0.954
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHENIX
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0001.880
High resolution limit [Å]1.8401.840
Number of reflections938924772
<I/σ(I)>26.3
Completeness [%]98.4
Redundancy3.8
CC(1/2)0.9960.708
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2870.2 M MgCl2, 0.1 M Tris-HCl (pH 8.5), and 25% (w/v) polyethylene glycol (PEG) 3,350

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