Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

7UP6

Crystal structure of C-terminal domain of MSK1 in complex with in covalently bound literature RSK2 inhibitor pyrrolopyrimidine cyanoacrylamide compound 25 (co-crystal)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-F
Synchrotron siteAPS
Beamline21-ID-F
Temperature [K]100
Detector technologyCCD
Collection date2018-03-08
DetectorRAYONIX MX-300
Wavelength(s)0.97872
Spacegroup nameP 61
Unit cell lengths71.170, 71.170, 144.840
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution35.590 - 2.600
R-factor0.17
Rwork0.166
R-free0.20900
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)in-house model
RMSD bond length0.004
RMSD bond angle0.593
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.13)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]35.5902.670
High resolution limit [Å]2.6002.600
Rmerge0.0840.575
Rmeas0.0900.037
Total number of observations98583
Number of reflections12830154
<I/σ(I)>17.022.82
Completeness [%]99.9100
Redundancy7.77.5
CC(1/2)0.9990.999
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.5289Crystals were produced by sitting drop vapor diffusion with an equal volume of the protein, Msk1-C terminal domain (PID6598-1, CID101276) at 4.91 mg/ml in 25mM HEPES pH 7.5, 150mM NaCl, 5% Glycerol, 5mM BME and a crystallization buffer containing 12.5% PEG 1000, 12.5% PEG 3350, 12.5% MPD: 20mM of each sodium formate, ammonium acetate, trisodium citrate, sodium-potassium tartrate, sodium oxamate: 100 mM MOPS / HEPES-Na pH 7.5 (tray ID 298849, well G8, Morpheus). Crystals were direly vitrified in in liquid N2. Puck ID BOW0-8

231029

PDB entries from 2025-02-05

PDB statisticsPDBj update infoContact PDBjnumon