7UK7
YjfC from Escherichia coli K-12 in complex with ADP, Mg2+ and SO4
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
Synchrotron site | Australian Synchrotron |
Beamline | MX1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-07-17 |
Detector | DECTRIS EIGER2 X 9M |
Wavelength(s) | 0.9537 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 66.010, 68.885, 114.309 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.990 - 1.950 |
R-factor | 0.16 |
Rwork | 0.158 |
R-free | 0.19170 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7uk6 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.1.2-3874) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 43.990 | 43.990 | 2.000 |
High resolution limit [Å] | 1.950 | 8.940 | 1.950 |
Rmerge | 0.103 | 0.026 | 0.836 |
Rmeas | 0.107 | 0.027 | 0.871 |
Rpim | 0.029 | 0.008 | 0.242 |
Total number of observations | 525889 | 5902 | 32934 |
Number of reflections | 38719 | 482 | 2637 |
<I/σ(I)> | 20.1 | 72.1 | 3.2 |
Completeness [%] | 99.9 | 99.5 | 98.5 |
Redundancy | 13.6 | 12.2 | 12.5 |
CC(1/2) | 0.999 | 1.000 | 0.847 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289.15 | 200 mM lithium sulfate monohydrate, 100 mM Tris-HCl pH 8.5, and 30% PEG 4000 |