7UH4
LXG-associated alpha-helical protein D2 (LapD2)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-07-21 |
Detector | DECTRIS PILATUS3 X 6M |
Wavelength(s) | 0.97926 |
Spacegroup name | P 31 |
Unit cell lengths | 45.590, 45.590, 298.440 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 39.480 - 2.200 |
R-factor | 0.2373 |
Rwork | 0.233 |
R-free | 0.26670 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | SAD model |
RMSD bond length | 0.005 |
RMSD bond angle | 0.733 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | HKL-3000 |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.600 | 2.240 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.078 | 2.120 |
Number of reflections | 34956 | 1569 |
<I/σ(I)> | 12.9 | 0.8 |
Completeness [%] | 99.3 | 90.6 |
Redundancy | 11.1 | 6.6 |
CC(1/2) | 0.999 | 0.474 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 296 | 0.2M lithium sulfate, 0.1M Tris-HCl, pH 8.0, 30% PEG 4000 |