7UG9
Crystal structure of RNase AM PHP domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-11-06 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 40.289, 74.389, 40.079 |
Unit cell angles | 90.00, 118.98, 90.00 |
Refinement procedure
Resolution | 37.190 - 1.690 |
R-factor | 0.1848 |
Rwork | 0.182 |
R-free | 0.21500 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2yb1 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.20_4459) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 37.190 | 37.190 | 1.730 |
High resolution limit [Å] | 1.690 | 7.560 | 1.690 |
Rmerge | 0.113 | 0.114 | 0.582 |
Rmeas | 0.139 | 0.140 | 0.728 |
Total number of observations | 114177 | ||
Number of reflections | 42453 | 513 | 2961 |
<I/σ(I)> | 6.59 | 11.14 | 2.21 |
Completeness [%] | 92.7 | 96.1 | 87.2 |
Redundancy | 2.689 | 2.842 | 2.645 |
CC(1/2) | 0.971 | 0.963 | 0.769 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 20 % (w/v) PEG8000, 0.1 M Hepes pH 7.0 |