7UFK
Crystal structure of chimeric omicron RBD (strain BA.2) complexed with human ACE2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-1 |
Synchrotron site | SSRL |
Beamline | BL12-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-02-23 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.979 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 80.397, 117.861, 113.018 |
Unit cell angles | 90.00, 92.13, 90.00 |
Refinement procedure
Resolution | 29.010 - 2.380 |
R-factor | 0.194 |
Rwork | 0.192 |
R-free | 0.23530 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 6vw1 |
RMSD bond length | 0.001 |
RMSD bond angle | 0.388 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 81.600 | 2.710 |
High resolution limit [Å] | 2.380 | 2.380 |
Rmerge | 0.043 | |
Number of reflections | 43192 | 2160 |
<I/σ(I)> | 17 | |
Completeness [%] | 51.4 | |
Redundancy | 4 | |
CC(1/2) | 0.999 | 0.673 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | 100 mM Tris, pH 8.5, 18-22% PEG6000, 100 mM sodium chloride |