7U21
Human Class I MHC HLA-A2 in complex with AVGSYVYSV peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-10-22 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 58.481, 84.647, 84.323 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.050 - 1.900 |
R-factor | 0.1948 |
Rwork | 0.193 |
R-free | 0.21430 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3pwl |
RMSD bond length | 0.006 |
RMSD bond angle | 0.898 |
Data reduction software | DIALS |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.20rc3_4406) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.050 | 1.968 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.046 | 0.213 |
Rmeas | 0.064 | 0.302 |
Rpim | 0.046 | 0.213 |
Number of reflections | 61286 | 5495 |
<I/σ(I)> | 8.2 | 1.49 |
Completeness [%] | 93.4 | 85.5 |
Redundancy | 2 | |
CC(1/2) | 0.997 | 0.889 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 277 | 15% PEG 3350, 0.1M MES pH 6.5 |