7TX5
Neutron crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ADP-ribose at 293 K (C2 crystal form)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 293 |
Detector technology | PIXEL |
Collection date | 2021-08-30 |
Detector | DECTRIS EIGER R 4M |
Wavelength(s) | 1.54 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 132.808, 36.653, 38.233 |
Unit cell angles | 90.00, 98.09, 90.00 |
Refinement procedure
Resolution | 32.870 - 2.300 |
Rwork | 0.187 |
R-free | 0.25920 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.010 |
RMSD bond angle | 1.354 |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.20_4459) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 65.740 | 2.400 | 2.020 |
High resolution limit [Å] | 1.950 | 2.300 | 1.950 |
Rmerge | 0.070 | 0.281 | 0.236 |
Rpim | 0.036 | ||
Number of reflections | 12576 | 684 | 1072 |
<I/σ(I)> | 19.2 | 3.2 | 6 |
Completeness [%] | 92.9 | 57.3 | 79.2 |
Redundancy | 5.6 | 4.4 | 5.3 |
CC(1/2) | 0.992 | 0.610 | 0.954 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 289 | 100 mM MES pH 6.5, 25% PEG 4000 |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 289 | 100 mM MES pH 6.5, 25% PEG 4000 |