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7TX0

Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ADP-ribose at pH 9 (P43 crystal form)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.3.1
Synchrotron siteALS
Beamline8.3.1
Temperature [K]100
Detector technologyPIXEL
Collection date2021-06-15
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)0.7294
Spacegroup nameP 43
Unit cell lengths88.451, 88.451, 39.823
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution44.230 - 0.840
R-factor0.1005
Rwork0.100
R-free0.11100
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7kqo
RMSD bond length0.010
RMSD bond angle1.224
Data reduction softwareXDS (Feb 5, 2021)
Data scaling softwareXDS (Feb 5, 2021)
Phasing softwarePHASER (2.8.3)
Refinement softwarePHENIX (1.20_4459)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]44.2300.871
High resolution limit [Å]0.8400.840
Rmerge0.0280.498
Number of reflections27842627466
<I/σ(I)>41.39
Completeness [%]99.9
Redundancy13.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP9.5293100 mM CHES pH 9.5, 28% PEG 3000

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