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7TWY

Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ADP-ribose at pH 8 (P43 crystal form)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.3.1
Synchrotron siteALS
Beamline8.3.1
Temperature [K]100
Detector technologyPIXEL
Collection date2021-06-15
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)0.7749
Spacegroup nameP 43
Unit cell lengths88.397, 88.397, 39.810
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution44.200 - 0.900
R-factor0.0936
Rwork0.093
R-free0.10670
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7kqo
RMSD bond length0.011
RMSD bond angle1.222
Data reduction softwareXDS (Feb 5, 2021)
Data scaling softwareXDS (Feb 5, 2021)
Phasing softwarePHASER (2.8.3)
Refinement softwarePHENIX (1.20_4459)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]44.2000.933
High resolution limit [Å]0.9000.900
Rmerge0.0220.180
Number of reflections22656922468
<I/σ(I)>40.54
Completeness [%]99.9
Redundancy6.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP9.5293100 mM CHES pH 9.5, 28% PEG 3000

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PDB entries from 2024-05-15

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