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7TU0

Structure of the L. blandensis dGTPase bound to Mn

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-ID
Synchrotron siteAPS
Beamline22-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2019-06-07
DetectorDECTRIS EIGER X 16M
Wavelength(s)1.0
Spacegroup nameP 41 21 2
Unit cell lengths181.338, 181.338, 110.606
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution45.330 - 2.040
R-factor0.1914
Rwork0.191
R-free0.21560
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3bg2
RMSD bond length0.008
RMSD bond angle0.899
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.170
High resolution limit [Å]2.0402.040
Rmerge0.0891.660
Rmeas0.0921.720
Number of reflections11492318328
<I/σ(I)>17.781.53
Completeness [%]100.099.9
Redundancy15.315.6
CC(1/2)0.9990.669
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.5293Crystal grown in 1ul:1ul drops of well solution (0.8M Sodium Potassium Tartrate, 0.22M Lithium Sulfate, 0.1M Bis-Tris pH 6.5) and 10mg/mL protein. Cryoprotected by soaking in well solution with 30% ethylene glycol and 1mM MnCl2 added

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PDB entries from 2024-05-15

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