7TU0
Structure of the L. blandensis dGTPase bound to Mn
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-06-07 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 181.338, 181.338, 110.606 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.330 - 2.040 |
R-factor | 0.1914 |
Rwork | 0.191 |
R-free | 0.21560 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3bg2 |
RMSD bond length | 0.008 |
RMSD bond angle | 0.899 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.170 |
High resolution limit [Å] | 2.040 | 2.040 |
Rmerge | 0.089 | 1.660 |
Rmeas | 0.092 | 1.720 |
Number of reflections | 114923 | 18328 |
<I/σ(I)> | 17.78 | 1.53 |
Completeness [%] | 100.0 | 99.9 |
Redundancy | 15.3 | 15.6 |
CC(1/2) | 0.999 | 0.669 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | Crystal grown in 1ul:1ul drops of well solution (0.8M Sodium Potassium Tartrate, 0.22M Lithium Sulfate, 0.1M Bis-Tris pH 6.5) and 10mg/mL protein. Cryoprotected by soaking in well solution with 30% ethylene glycol and 1mM MnCl2 added |