7TSJ
Xenon-bound structure of carbon monoxide dehydrogenase (CODH) from Desulfovibrio vulgaris
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-12-02 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.9791 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 113.892, 100.870, 65.384 |
Unit cell angles | 90.00, 124.88, 90.00 |
Refinement procedure
Resolution | 46.720 - 2.100 |
R-factor | 0.1689 |
Rwork | 0.167 |
R-free | 0.20580 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6b6v |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.720 | 46.720 | 2.230 |
High resolution limit [Å] | 2.100 | 6.240 | 2.100 |
Rmerge | 0.062 | 0.043 | 0.475 |
Rmeas | 0.071 | 0.049 | 0.547 |
Total number of observations | 134825 | ||
Number of reflections | 34865 | 1320 | 5624 |
<I/σ(I)> | 12.57 | 30.56 | 2.88 |
Completeness [%] | 97.7 | 92.8 | 98 |
Redundancy | 3.867 | 3.926 | 3.673 |
CC(1/2) | 0.998 | 0.996 | 0.892 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 298 | 250 mM MgCl2, 16% (w/v) PEG 3350 |