7TOT
Crystal Structure of pantothenate synthetase from Bartonella henselae
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2021-04-01 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97872 |
Spacegroup name | P 1 |
Unit cell lengths | 45.820, 51.260, 78.650 |
Unit cell angles | 108.90, 99.37, 90.60 |
Refinement procedure
Resolution | 35.350 - 1.800 |
R-factor | 0.1798 |
Rwork | 0.179 |
R-free | 0.21600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2ejc |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MoRDa |
Refinement software | PHENIX (4438) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 35.350 | 35.350 | 1.850 |
High resolution limit [Å] | 1.800 | 8.050 | 1.800 |
Rmerge | 0.023 | 0.013 | 0.349 |
Rmeas | 0.031 | 0.017 | 0.470 |
Total number of observations | 128748 | ||
Number of reflections | 58720 | 618 | 4357 |
<I/σ(I)> | 19.95 | 52 | 2.7 |
Completeness [%] | 94.9 | 88.2 | 94.7 |
Redundancy | 2.193 | 2.002 | 2.214 |
CC(1/2) | 0.999 | 0.999 | 0.895 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 290 | Protein at 21 mg/mL was mixed 1:1 (0.4 uL protein and 0.4 uL precipitant) with 12.5% w/v PEG 1000, 12.5% w/v PEG3350, 12.5% v/v MPD, 0.03 M each sodium nitrate, disodium hydrogen phosphate, and ammonium sulfate, and 0.1 M MES/imidazole pH 7.5 (Morpheus C8). Cryo: Direct. Tray: 320104c8: pin: ifl7-5 |