7TM7
Crystal structure of Alpha-1,4 glucan phosphorylase from Klebsiella pneumoniae
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 19-ID |
Synchrotron site | NSLS-II |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-11-19 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9840 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 72.862, 150.386, 156.352 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 22.090 - 1.910 |
R-factor | 0.1732 |
Rwork | 0.171 |
R-free | 0.21310 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1l5w |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.7) |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 156.350 | 156.350 | 1.960 |
High resolution limit [Å] | 1.910 | 8.540 | 1.910 |
Rmerge | 0.099 | 0.021 | 0.898 |
Rmeas | 0.107 | 0.023 | 0.967 |
Rpim | 0.040 | 0.009 | 0.358 |
Total number of observations | 900358 | 10878 | 68565 |
Number of reflections | 131263 | 1697 | 9638 |
<I/σ(I)> | 13.3 | 53.2 | 2 |
Completeness [%] | 98.4 | 99.7 | 98.5 |
Redundancy | 6.9 | 6.4 | 7.1 |
CC(1/2) | 0.999 | 1.000 | 0.775 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | Index H10: 20% (w/v) PEG 3350, 0.2 M Sodium citrate tribasic dihydrate, KlpnC.20502.a.B1.PW39073 at 30 mg/mL, Tray: plate 12363 well H4 drop 2, Puck: PSL1309, Cryo: 80% crystallant + 20% PEG 200 |