7THH
SUD-C and Ubl2 domains of SARS CoV-2 Nsp3 protein
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-11-12 |
Detector | DECTRIS PILATUS3 X 6M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 30.173, 113.693, 109.688 |
Unit cell angles | 90.00, 93.02, 90.00 |
Refinement procedure
Resolution | 49.390 - 1.320 |
R-factor | 0.147 |
Rwork | 0.145 |
R-free | 0.19090 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6wrh |
RMSD bond length | 0.009 |
RMSD bond angle | 1.450 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | HKL-3000 |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.390 | 49.390 | 1.350 |
High resolution limit [Å] | 1.320 | 3.610 | 1.320 |
Rmerge | 0.136 | 0.100 | 1.390 |
Rmeas | 0.141 | 0.104 | 1.522 |
Rpim | 0.035 | 0.025 | 0.597 |
Number of reflections | 169862 | 8710 | 7797 |
<I/σ(I)> | 6.3 | 1.13 | |
Completeness [%] | 99.3 | 100 | 92.1 |
Redundancy | 12.9 | 17.3 | 5.3 |
CC(1/2) | 0.985 | 0.996 | 0.513 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.6 | 289 | 0.2 M ammonium iodide, 20% PEG 3350 |