7TH3
Single-domain VHH intrabodies neutralize ricin toxin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-06-17 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.979 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 38.337, 67.113, 68.100 |
Unit cell angles | 90.00, 91.06, 90.00 |
Refinement procedure
Resolution | 47.797 - 2.292 |
R-factor | 0.2489 |
Rwork | 0.248 |
R-free | 0.27230 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1rtc 4lgr |
RMSD bond length | 0.004 |
RMSD bond angle | 0.629 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.340 |
High resolution limit [Å] | 2.292 | 6.240 | 2.300 |
Rmerge | 0.040 | 0.023 | 0.177 |
Rmeas | 0.048 | 0.027 | 0.212 |
Rpim | 0.026 | 0.015 | 0.115 |
Number of reflections | 15311 | 790 | 777 |
<I/σ(I)> | 9.2 | ||
Completeness [%] | 98.6 | 96.8 | 99.6 |
Redundancy | 3.2 | 3.3 | 3.1 |
CC(1/2) | 0.999 | 0.962 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 298 | 418 mM ammonium chloride, 22% PEG 3350 |