7TCM
Crystal Structure of aspartate-semialdehyde dehydrogenase from Acinetobacter baumannii in complex with NADP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2021-11-21 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97872 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 82.950, 53.210, 87.330 |
Unit cell angles | 90.00, 102.36, 90.00 |
Refinement procedure
Resolution | 45.150 - 1.950 |
R-factor | 0.1528 |
Rwork | 0.152 |
R-free | 0.18420 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | apo structure pdb entry 7SKB |
RMSD bond length | 0.007 |
RMSD bond angle | 0.822 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.20-4438) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.000 |
High resolution limit [Å] | 1.950 | 8.720 | 1.950 |
Rmerge | 0.043 | 0.030 | 0.191 |
Rmeas | 0.050 | 0.036 | 0.249 |
Number of reflections | 53292 | 656 | 3245 |
<I/σ(I)> | 18.42 | 35.39 | 4.3 |
Completeness [%] | 97.4 | 97.5 | 80.9 |
Redundancy | 3.498 | 3.308 | 2.34 |
CC(1/2) | 0.998 | 0.998 | 0.945 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 287 | Molecular Dimensions/Calibre MCSG1 screen, condition B3: 200mM Ammonium acetate,100mM BisTris / HCl pH 5.5, 25% (w/V) PEG 3350: AcbaC.17885.a.B1.PW38925 at 18mg/ml + 3mM NADP: additionally soaked over night with 5mM NADP: tray 3420159 b5: 15% EG + soak: puck: xdl8-1. |