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7TA1

Human Ornithine Aminotransferase (hOAT) soaked with gamma-Aminobutyric acid

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-D
Synchrotron siteAPS
Beamline21-ID-D
Temperature [K]100
Detector technologyPIXEL
Collection date2021-07-03
DetectorDECTRIS EIGER X 9M
Wavelength(s)1.1271
Spacegroup nameP 31 2 1
Unit cell lengths114.607, 114.607, 349.326
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution99.250 - 2.200
R-factor0.2552
Rwork0.251
R-free0.26810
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1oat
RMSD bond length0.004
RMSD bond angle0.818
Data reduction softwareautoPROC
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]99.2502.120
High resolution limit [Å]2.0102.010
Number of reflections17753125577
<I/σ(I)>6.7
Completeness [%]99.899.9
Redundancy6.1
CC(1/2)0.9930.417
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.8293Once hOAT was purified, it was transferred to a 10 kDa centrifugal filter tube and concentrated to ~6 mg/mL. The holoenzyme crystals were first grown via a hanging drop vapor diffusion method. Each drop contained 2 uL of protein and 2 uL of well solution. The best crystallization condition contained 8% PEG 6000, 100 mM NaCl, 5% glycerol, and 50 mM Tricine pH 7.8. Once holoenzyme crystals reached their maximum size within seven days, 1 uL of 10 mM GABA was added to the drop with crystals. The crystals were soaked for different time periods from 50 minutes to 2.5 hours. After soaking, crystals were transferred into a cryoprotective solution (well solution supplemented with 30% glycerol), and then flash-frozen in liquid nitrogen.

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PDB entries from 2025-12-03

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