7T7O
Structure of SPAC806.04c protein from fission yeast covalently bound to BeF3
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-11-09 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 1.60601 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 57.937, 116.495, 151.573 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.350 - 2.160 |
R-factor | 0.2026 |
Rwork | 0.202 |
R-free | 0.23490 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7t7k |
RMSD bond length | 0.008 |
RMSD bond angle | 0.939 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.080 | 2.220 |
High resolution limit [Å] | 2.160 | 2.160 |
Rpim | 0.110 | 0.487 |
Number of reflections | 55903 | 4532 |
<I/σ(I)> | 7.6 | 2.6 |
Completeness [%] | 99.9 | 99.9 |
Redundancy | 11.4 | 11 |
CC(1/2) | 0.989 | 0.629 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 295 | 0.3 mM SPAC806.04c protein in 5 mM CoCl2, 5 mM BeCl2, 15 mM NaF, 15 mM Tris-HCl (pH 7.5), and 112 mM NaCl-containing buffer mixed with equla volume of 1.8 M sodium phosphate monobasic monohydrate/potassium phosphate dibasic (pH 8.0) |