7T7K
Structure of SPAC806.04c protein from fission yeast bound to Co2+
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-07-07 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.97918 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 58.654, 116.314, 151.862 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.420 - 1.900 |
R-factor | 0.1653 |
Rwork | 0.164 |
R-free | 0.19570 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | a low resolution structure (2.75A) obtained with a Phyre2 model for a diffferent crystal of the same protein |
RMSD bond length | 0.007 |
RMSD bond angle | 0.922 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.510 | 1.940 |
High resolution limit [Å] | 1.900 | 1.900 |
Rpim | 0.043 | 0.383 |
Number of reflections | 82654 | 4480 |
<I/σ(I)> | 12 | 2.2 |
Completeness [%] | 99.9 | 99.8 |
Redundancy | 9.4 | 9.6 |
CC(1/2) | 0.999 | 0.750 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 295 | 0.3 mM SPAC806.04c, 5 mM CoCl2, 19 mM Tris-HCl (pH 7.5), and 142 mM NaCl buffer mixed with precipitant solution containing 1.8 M sodium phosphate monobasic monohydrate/potassium phosphate dibasic (pH 8.2) |