7T2A
Crystal structure of HLA-DP4 in complex with Ply
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
Synchrotron site | Australian Synchrotron |
Beamline | MX1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-03-16 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 0.95370 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 101.669, 101.669, 215.187 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.400 - 3.040 |
R-factor | 0.2194 |
Rwork | 0.217 |
R-free | 0.25930 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4p5k |
RMSD bond length | 0.002 |
RMSD bond angle | 0.547 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 38.400 | 3.100 |
High resolution limit [Å] | 3.000 | 3.000 |
Number of reflections | 22483 | 2197 |
<I/σ(I)> | 8 | 1.5 |
Completeness [%] | 99.8 | |
Redundancy | 2 | 2 |
CC(1/2) | 0.996 | 0.661 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293.15 | Sodium chloride, PEG 3350 |